Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
AccommodationAtSSMeanTest (class in neuronunit.tests.druckmann2013)
AccommodationRateMeanAtSSTest (class in neuronunit.tests.druckmann2013)
AccommodationRateToSSTest (class in neuronunit.tests.druckmann2013)
active_values() (in module neuronunit.optimization.optimization_management)
add_constant() (in module neuronunit.optimization.exhaustive_search)
(in module neuronunit.optimization.optimization_management)
(neuronunit.optimization.data_transport_container.DataTC method)
adjust_spines() (in module neuronunit.plottools)
aggregate_repetitions() (neuronunit.tests.druckmann2013.AP1DelaySDTest method)
(neuronunit.tests.druckmann2013.Burst1ISISDTest method)
(neuronunit.tests.druckmann2013.Druckmann2013Test method)
allocate_worst() (in module neuronunit.optimization.optimization_management)
alpha_h (in module neuronunit.models.backends.hhrawf)
alpha_m (in module neuronunit.models.backends.hhrawf)
alpha_n (in module neuronunit.models.backends.hhrawf)
AP12AHPDepthPercentChangeTest (class in neuronunit.tests.druckmann2013)
AP12AmplitudeChangePercentTest (class in neuronunit.tests.druckmann2013)
AP12AmplitudeDropTest (class in neuronunit.tests.druckmann2013)
AP12HalfWidthChangePercentTest (class in neuronunit.tests.druckmann2013)
AP12RateOfChangePeakToTroughPercentChangeTest (class in neuronunit.tests.druckmann2013)
AP1AHPDepthTest (class in neuronunit.tests.druckmann2013)
AP1AmplitudeTest (class in neuronunit.tests.druckmann2013)
AP1DelayMeanStrongStimTest (class in neuronunit.tests.druckmann2013)
AP1DelayMeanTest (class in neuronunit.tests.druckmann2013)
AP1DelaySDStrongStimTest (class in neuronunit.tests.druckmann2013)
AP1DelaySDTest (class in neuronunit.tests.druckmann2013)
AP1RateOfChangePeakToTroughTest (class in neuronunit.tests.druckmann2013)
AP1SSAmplitudeChangeTest (class in neuronunit.tests.druckmann2013)
AP1WidthHalfHeightTest (class in neuronunit.tests.druckmann2013)
AP1WidthPeakToTroughTest (class in neuronunit.tests.druckmann2013)
AP2AHPDepthTest (class in neuronunit.tests.druckmann2013)
AP2AmplitudeTest (class in neuronunit.tests.druckmann2013)
AP2DelayMeanStrongStimTest (class in neuronunit.tests.druckmann2013)
AP2DelayMeanTest (class in neuronunit.tests.druckmann2013)
AP2DelaySDStrongStimTest (class in neuronunit.tests.druckmann2013)
AP2DelaySDTest (class in neuronunit.tests.druckmann2013)
AP2RateOfChangePeakToTroughTest (class in neuronunit.tests.druckmann2013)
AP2WidthHalfHeightTest (class in neuronunit.tests.druckmann2013)
AP2WidthPeakToTroughTest (class in neuronunit.tests.druckmann2013)
APAmplitudeTest (class in neuronunit.tests.waveform)
ApicalDendriteAverageBifurcationAngleLocalTest (class in neuronunit.tests.morphology)
ApicalDendriteAverageBifurcationAngleRemoteTest (class in neuronunit.tests.morphology)
ApicalDendriteAverageContractionTest (class in neuronunit.tests.morphology)
ApicalDendriteAverageDiameterTest (class in neuronunit.tests.morphology)
ApicalDendriteAverageRallsRatioTest (class in neuronunit.tests.morphology)
ApicalDendriteFractalDimensionTest (class in neuronunit.tests.morphology)
ApicalDendriteMaxBranchOrderTest (class in neuronunit.tests.morphology)
ApicalDendriteMaxEuclideanDistanceTest (class in neuronunit.tests.morphology)
ApicalDendriteMaxPathDistanceTest (class in neuronunit.tests.morphology)
ApicalDendriteNumberofBifurcationsTest (class in neuronunit.tests.morphology)
ApicalDendriteNumberofBranchesTest (class in neuronunit.tests.morphology)
ApicalDendriteOverallDepthTest (class in neuronunit.tests.morphology)
ApicalDendriteOverallHeightTest (class in neuronunit.tests.morphology)
ApicalDendriteOverallWidthTest (class in neuronunit.tests.morphology)
ApicalDendritePartitionAsymmetryTest (class in neuronunit.tests.morphology)
ApicalDendriteTotalLengthTest (class in neuronunit.tests.morphology)
ApicalDendriteTotalSurfaceTest (class in neuronunit.tests.morphology)
ApicalDendriteTotalVolumeTest (class in neuronunit.tests.morphology)
apply_stimulus() (neuronunit.models.backends.glif.GLIFBackend method)
APThresholdTest (class in neuronunit.tests.waveform)
APWidthTest (class in neuronunit.tests.waveform)
Article (class in neuronunit.neuroelectro)
article (neuronunit.neuroelectro.NeuroElectroDataMap attribute)
as_lems_model() (neuronunit.models.backends.glif.GLIFBackend method)
AverageBifurcationAngleLocalTest (class in neuronunit.tests.morphology)
AverageBifurcationAngleRemoteTest (class in neuronunit.tests.morphology)
AverageContractionTest (class in neuronunit.tests.morphology)
AverageDiameterTest (class in neuronunit.tests.morphology)
AverageRallsRatioTest (class in neuronunit.tests.morphology)
B
backend (neuronunit.models.backends.geppetto.GeppettoBackend attribute)
(neuronunit.models.backends.jNeuroML.jNeuroMLBackend attribute)
bar_chart() (in module neuronunit.plottools)
BasalDendriteAverageBifurcationAngleLocalTest (class in neuronunit.tests.morphology)
BasalDendriteAverageBifurcationAngleRemoteTest (class in neuronunit.tests.morphology)
BasalDendriteAverageContractionTest (class in neuronunit.tests.morphology)
BasalDendriteAverageDiameterTest (class in neuronunit.tests.morphology)
BasalDendriteAverageRallsRatioTest (class in neuronunit.tests.morphology)
BasalDendriteFractalDimensionTest (class in neuronunit.tests.morphology)
BasalDendriteMaxBranchOrderTest (class in neuronunit.tests.morphology)
BasalDendriteMaxEuclideanDistanceTest (class in neuronunit.tests.morphology)
BasalDendriteMaxPathDistanceTest (class in neuronunit.tests.morphology)
BasalDendriteNumberofBifurcationsTest (class in neuronunit.tests.morphology)
BasalDendriteNumberofBranchesTest (class in neuronunit.tests.morphology)
BasalDendriteOverallDepthTest (class in neuronunit.tests.morphology)
BasalDendriteOverallHeightTest (class in neuronunit.tests.morphology)
BasalDendriteOverallWidthTest (class in neuronunit.tests.morphology)
BasalDendritePartitionAsymmetryTest (class in neuronunit.tests.morphology)
BasalDendriteTotalLengthTest (class in neuronunit.tests.morphology)
BasalDendriteTotalSurfaceTest (class in neuronunit.tests.morphology)
BasalDendriteTotalVolumeTest (class in neuronunit.tests.morphology)
best_worst() (in module neuronunit.plottools)
beta_h (in module neuronunit.models.backends.hhrawf)
beta_m (in module neuronunit.models.backends.hhrawf)
beta_n (in module neuronunit.models.backends.hhrawf)
bind_NU_interface() (in module neuronunit.models.bindings)
bind_score() (neuronunit.tests.base.VmTest method)
(neuronunit.tests.fi.RheobaseTest method)
bridge_judge() (in module neuronunit.optimization.optimization_management)
build_chunk_grid() (in module neuronunit.optimization.exhaustive_search)
build_model() (neuronunit.cellmodelp.CellModel method)
Burst1ISIMeanStrongStimTest (class in neuronunit.tests.druckmann2013)
Burst1ISIMeanTest (class in neuronunit.tests.druckmann2013)
Burst1ISISDStrongStimTest (class in neuronunit.tests.druckmann2013)
Burst1ISISDTest (class in neuronunit.tests.druckmann2013)
BurstinessTest (class in neuronunit.tests.dynamics)
C
ca_compute_iv_curve() (neuronunit.models.channel.ChannelModel method)
ca_make_lems_file() (neuronunit.capabilities.channel.NML2ChannelAnalysis method)
(neuronunit.models.channel.ChannelModel method)
ca_run_lems_file() (neuronunit.capabilities.channel.NML2ChannelAnalysis method)
(neuronunit.models.channel.ChannelModel method)
CapacitanceTest (class in neuronunit.tests.passive)
cell_name (neuronunit.models.backends.neuron.NEURONBackend attribute)
CellModel (class in neuronunit.cellmodelp)
ChannelModel (class in neuronunit.models.channel)
check() (neuronunit.neuroelectro.NeuroElectroData method)
check_current() (in module neuronunit.tests.fi)
check_fix_range() (in module neuronunit.tests.fi)
chunks() (in module neuronunit.optimization.exhaustive_search)
compute_iv_curve() (neuronunit.capabilities.channel.NML2ChannelAnalysis method)
compute_params() (neuronunit.tests.base.VmTest method)
(neuronunit.tests.passive.TestPulseTest method)
(neuronunit.tests.waveform.InjectedCurrent method)
compute_score() (neuronunit.tests.base.FakeTest method)
(neuronunit.tests.FakeTest method)
(neuronunit.tests.dynamics.BurstinessTest method)
(neuronunit.tests.dynamics.FiringRateTest method)
(neuronunit.tests.dynamics.ISICVTest method)
(neuronunit.tests.dynamics.ISITest method)
(neuronunit.tests.dynamics.LocalVariationTest method)
(neuronunit.tests.dynamics.TFRTypeTest method)
(neuronunit.tests.fi.RheobaseTest method)
(neuronunit.tests.passive.CapacitanceTest method)
(neuronunit.tests.passive.RestingPotentialTest method)
(neuronunit.tests.passive.TestPulseTest method)
(neuronunit.tests.passive.TimeConstantTest method)
(neuronunit.tests.waveform.APAmplitudeTest method)
(neuronunit.tests.waveform.APThresholdTest method)
(neuronunit.tests.waveform.APWidthTest method)
compute_waveform_error() (neuronunit.cellmodelp.CellModel method)
condition_model() (neuronunit.tests.base.VmTest method)
(neuronunit.tests.fi.RheobaseTest method)
(neuronunit.tests.fi.RheobaseTestP method)
(neuronunit.tests.passive.TestPulseTest method)
create_a_map (in module neuronunit.optimization.exhaustive_search)
create_grid() (in module neuronunit.optimization.exhaustive_search)
create_lems_file_copy() (neuronunit.models.lems.LEMSModel method)
create_subset() (in module neuronunit.optimization.optimization_management)
current_length() (neuronunit.tests.druckmann2013.Druckmann2013Test method)
current_src_name (neuronunit.models.backends.neuron.NEURONBackend attribute)
cv_threshold (neuronunit.tests.dynamics.BurstinessTest attribute)
D
dALLdt (in module neuronunit.models.backends.hhrawf)
DataTC (class in neuronunit.optimization.data_transport_container)
default_params (neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TestPulseTest attribute)
(neuronunit.tests.waveform.InjectedCurrent attribute)
description (neuronunit.tests.druckmann2013.AccommodationAtSSMeanTest attribute)
(neuronunit.tests.druckmann2013.AP12AHPDepthPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeDropTest attribute)
(neuronunit.tests.druckmann2013.AP12HalfWidthChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12RateOfChangePeakToTroughPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1AHPDepthTest attribute)
(neuronunit.tests.druckmann2013.AP1AmplitudeTest attribute)
(neuronunit.tests.druckmann2013.AP1DelayMeanTest attribute)
(neuronunit.tests.druckmann2013.AP1DelaySDTest attribute)
(neuronunit.tests.druckmann2013.AP1RateOfChangePeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP1SSAmplitudeChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthHalfHeightTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthPeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP2AHPDepthTest attribute)
(neuronunit.tests.druckmann2013.AP2AmplitudeTest attribute)
(neuronunit.tests.druckmann2013.AP2DelayMeanTest attribute)
(neuronunit.tests.druckmann2013.AP2DelaySDTest attribute)
(neuronunit.tests.druckmann2013.AP2RateOfChangePeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP2WidthHalfHeightTest attribute)
(neuronunit.tests.druckmann2013.AP2WidthPeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateMeanAtSSTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateToSSTest attribute)
(neuronunit.tests.druckmann2013.Burst1ISIMeanTest attribute)
(neuronunit.tests.druckmann2013.Burst1ISISDTest attribute)
(neuronunit.tests.druckmann2013.ISIBurstMeanChangeTest attribute)
(neuronunit.tests.druckmann2013.ISICVTest attribute)
(neuronunit.tests.druckmann2013.ISIMedianTest attribute)
(neuronunit.tests.druckmann2013.InitialAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.InputResistanceTest attribute)
(neuronunit.tests.druckmann2013.SSAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.SpikeRateStrongStimTest attribute)
(neuronunit.tests.dynamics.BurstinessTest attribute)
(neuronunit.tests.dynamics.FiringRateTest attribute)
(neuronunit.tests.dynamics.ISICVTest attribute)
(neuronunit.tests.dynamics.ISITest attribute)
(neuronunit.tests.dynamics.LocalVariationTest attribute)
(neuronunit.tests.dynamics.TFRTypeTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.fi.RheobaseTestP attribute)
(neuronunit.tests.passive.CapacitanceTest attribute)
(neuronunit.tests.passive.InputResistanceTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TimeConstantTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPAmplitudeTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPThresholdTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPWidthTest attribute)
Druckmann2013AP (class in neuronunit.tests.druckmann2013)
Druckmann2013Test (class in neuronunit.tests.druckmann2013)
dtc_to_plotting() (in module neuronunit.plottools)
dtc_to_rheo() (in module neuronunit.optimization.optimization_management)
E
eaAlphaMuPlusLambdaCheckpoint() (in module neuronunit.optimization.algorithms)
EphysProp (class in neuronunit.neuroelectro)
ephysprop_name (neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.fi.RheobaseTestP attribute)
(neuronunit.tests.passive.CapacitanceTest attribute)
(neuronunit.tests.passive.InputResistanceTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TimeConstantTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
error_domination() (in module neuronunit.optimization.results_analysis)
evaluate() (in module neuronunit.optimization.optimization_management)
exponential_fit() (neuronunit.tests.passive.TestPulseTest class method)
ExternalModel (class in neuronunit.models.static)
extra_capability_checks (neuronunit.models.lems.LEMSModel attribute)
extract_features() (neuronunit.tests.channel.IVCurvePeakTest method)
(neuronunit.tests.channel.IVCurveSSTest method)
(neuronunit.tests.passive.CapacitanceTest method)
(neuronunit.tests.passive.InputResistanceTest method)
(neuronunit.tests.passive.RestingPotentialTest method)
(neuronunit.tests.passive.TestPulseTest method)
(neuronunit.tests.passive.TimeConstantTest method)
F
FakeTest (class in neuronunit.tests)
(class in neuronunit.tests.base)
fetch_waveform_as_AnalogSignal() (neuronunit.neuromldb.NeuroMLDBModel method)
fetch_waveform_list() (neuronunit.neuromldb.NeuroMLDBModel method)
fill_missing_ns() (neuronunit.neuroelectro.NeuroElectroPooledSummary method)
fill_missing_sems_stds() (neuronunit.neuroelectro.NeuroElectroPooledSummary method)
filtered() (in module neuronunit.optimization.optimization_management)
find_border() (neuronunit.cellmodelp.CellModel method)
find_or_download_data() (in module neuronunit.bbp)
find_rheobase() (in module neuronunit.tests.fi)
find_sweeps() (in module neuronunit.bbp)
fire_condition() (neuronunit.models.backends.fhn.LinearIFNeuron method)
FiringRateTest (class in neuronunit.tests.dynamics)
FNNeuron (class in neuronunit.models.backends.fhn)
format_test() (in module neuronunit.optimization.optimization_management)
FractalDimensionTest (class in neuronunit.tests.morphology)
from_url (neuronunit.models.lems.LEMSModel attribute)
G
gene_bad() (in module neuronunit.optimization.algorithms)
generate_lems() (in module neuronunit.models.backends.parse_glif)
generate_prediction() (neuronunit.tests.base.FakeTest method)
(neuronunit.tests.FakeTest method)
(neuronunit.tests.druckmann2013.AP12AHPDepthPercentChangeTest method)
(neuronunit.tests.druckmann2013.AP12AmplitudeChangePercentTest method)
(neuronunit.tests.druckmann2013.AP12AmplitudeDropTest method)
(neuronunit.tests.druckmann2013.AP12HalfWidthChangePercentTest method)
(neuronunit.tests.druckmann2013.AP12RateOfChangePeakToTroughPercentChangeTest method)
(neuronunit.tests.druckmann2013.AP1AHPDepthTest method)
(neuronunit.tests.druckmann2013.AP1AmplitudeTest method)
(neuronunit.tests.druckmann2013.AP1RateOfChangePeakToTroughTest method)
(neuronunit.tests.druckmann2013.AP1SSAmplitudeChangeTest method)
(neuronunit.tests.druckmann2013.AP1WidthHalfHeightTest method)
(neuronunit.tests.druckmann2013.AP1WidthPeakToTroughTest method)
(neuronunit.tests.druckmann2013.AP2AHPDepthTest method)
(neuronunit.tests.druckmann2013.AP2AmplitudeTest method)
(neuronunit.tests.druckmann2013.AP2RateOfChangePeakToTroughTest method)
(neuronunit.tests.druckmann2013.AP2WidthHalfHeightTest method)
(neuronunit.tests.druckmann2013.AP2WidthPeakToTroughTest method)
(neuronunit.tests.druckmann2013.AccommodationAtSSMeanTest method)
(neuronunit.tests.druckmann2013.AccommodationRateToSSTest method)
(neuronunit.tests.druckmann2013.Druckmann2013Test method)
(neuronunit.tests.druckmann2013.ISIBurstMeanChangeTest method)
(neuronunit.tests.druckmann2013.ISICVTest method)
(neuronunit.tests.druckmann2013.ISIMedianTest method)
(neuronunit.tests.druckmann2013.InitialAccommodationMeanTest method)
(neuronunit.tests.druckmann2013.InputResistanceTest method)
(neuronunit.tests.druckmann2013.SSAccommodationMeanTest method)
(neuronunit.tests.druckmann2013.SpikeRateStrongStimTest method)
(neuronunit.tests.dynamics.BurstinessTest method)
(neuronunit.tests.dynamics.FiringRateTest method)
(neuronunit.tests.dynamics.ISICVTest method)
(neuronunit.tests.dynamics.ISITest method)
(neuronunit.tests.dynamics.LocalVariationTest method)
(neuronunit.tests.dynamics.TFRTypeTest method)
(neuronunit.tests.fi.RheobaseTest method)
(neuronunit.tests.fi.RheobaseTestP method)
(neuronunit.tests.morphology.AverageBifurcationAngleLocalTest method)
(neuronunit.tests.morphology.AverageBifurcationAngleRemoteTest method)
(neuronunit.tests.morphology.AverageContractionTest method)
(neuronunit.tests.morphology.AverageDiameterTest method)
(neuronunit.tests.morphology.AverageRallsRatioTest method)
(neuronunit.tests.morphology.FractalDimensionTest method)
(neuronunit.tests.morphology.MaxBranchOrderTest method)
(neuronunit.tests.morphology.MaxEuclideanDistanceTest method)
(neuronunit.tests.morphology.MaxPathDistanceTest method)
(neuronunit.tests.morphology.NumberofBifurcationsTest method)
(neuronunit.tests.morphology.NumberofBranchesTest method)
(neuronunit.tests.morphology.NumberofStemsTest method)
(neuronunit.tests.morphology.OverallDepthTest method)
(neuronunit.tests.morphology.OverallHeightTest method)
(neuronunit.tests.morphology.OverallWidthTest method)
(neuronunit.tests.morphology.PartitionAsymmetryTest method)
(neuronunit.tests.morphology.SomaSurfaceAreaTest method)
(neuronunit.tests.morphology.TotalLengthTest method)
(neuronunit.tests.morphology.TotalSurfaceTest method)
(neuronunit.tests.morphology.TotalVolumeTest method)
(neuronunit.tests.waveform.APAmplitudeTest method)
(neuronunit.tests.waveform.APThresholdTest method)
(neuronunit.tests.waveform.APWidthTest method)
(neuronunit.tests.waveform.InjectedCurrentAPAmplitudeTest method)
(neuronunit.tests.waveform.InjectedCurrentAPThresholdTest method)
(neuronunit.tests.waveform.InjectedCurrentAPWidthTest method)
generate_repetition_prediction() (neuronunit.tests.druckmann2013.AP1DelayMeanTest method)
(neuronunit.tests.druckmann2013.AP2DelayMeanTest method)
(neuronunit.tests.druckmann2013.AP2DelaySDTest method)
(neuronunit.tests.druckmann2013.Burst1ISIMeanTest method)
(neuronunit.tests.druckmann2013.Druckmann2013Test method)
GeppettoBackend (class in neuronunit.models.backends.geppetto)
get_abstract_cell() (neuronunit.cellmodelp.CellModel method)
get_amplitude() (neuronunit.tests.druckmann2013.Druckmann2013AP method)
get_AP_amplitudes() (neuronunit.capabilities.ProducesActionPotentials method)
get_AP_thresholds() (neuronunit.capabilities.ProducesActionPotentials method)
get_AP_widths() (neuronunit.capabilities.ProducesActionPotentials method)
get_APs() (neuronunit.capabilities.ProducesActionPotentials method)
(neuronunit.models.reduced.ReducedModel method)
(neuronunit.models.reduced.VeryReducedModel method)
(neuronunit.models.static.StaticModel method)
(neuronunit.models.very_reduced.VeryReducedModel method)
(neuronunit.tests.druckmann2013.Druckmann2013Test method)
get_arb_current_response() (neuronunit.cellmodelp.CellModel method)
get_backend() (neuronunit.models.reduced.VeryReducedModel method)
get_beginning() (neuronunit.tests.druckmann2013.Druckmann2013AP method)
get_cell_with_morphology() (neuronunit.cellmodelp.CellModel method)
get_curated_data() (in module neuronunit.bbp)
get_default_injected_square_current() (neuronunit.tests.base.VmTest class method)
get_diff (in module neuronunit.tests.druckmann2013)
get_diff_spikes (in module neuronunit.tests.druckmann2013)
get_druckmann2013_input_resistance_currents() (neuronunit.neuromldb.NeuroMLDBModel method)
get_druckmann2013_standard_current() (neuronunit.neuromldb.NeuroMLDBModel method)
get_druckmann2013_strong_current() (neuronunit.neuromldb.NeuroMLDBModel method)
get_files() (neuronunit.neuromldb.NeuroMLDBModel method)
get_final_result (neuronunit.tests.druckmann2013.AccommodationAtSSMeanTest attribute)
get_final_result() (neuronunit.tests.druckmann2013.AccommodationRateMeanAtSSTest method)
get_halfwidth() (neuronunit.tests.druckmann2013.Druckmann2013AP method)
get_id_from_nml_file() (neuronunit.cellmodelp.CellModel method)
get_initial_vm() (neuronunit.capabilities.ProducesMembranePotential method)
get_injected_square_current() (neuronunit.tests.base.VmTest method)
get_iqr_vm() (neuronunit.capabilities.ProducesMembranePotential method)
get_ISIs() (neuronunit.tests.druckmann2013.Druckmann2013Test method)
get_json() (neuronunit.neuroelectro.NeuroElectroData method)
get_lmeasure() (neuronunit.tests.morphology.MorphologyTest method)
get_mean_vm() (neuronunit.capabilities.ProducesMembranePotential method)
get_median_vm() (neuronunit.capabilities.ProducesMembranePotential method)
get_membrane_potential() (neuronunit.capabilities.ProducesMembranePotential method)
(neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.backends.hhrawf.HHBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.backends.rawpy.RAWBackend method)
(neuronunit.models.reduced.ReducedModel method)
(neuronunit.models.reduced.VeryReducedModel method)
(neuronunit.models.static.ExternalModel method)
(neuronunit.models.static.StaticModel method)
(neuronunit.models.very_reduced.VeryReducedModel method)
get_neuron_criteria() (in module neuronunit.optimization.get_neab)
get_nml_paths() (neuronunit.models.lems.LEMSModel method)
get_number_of_compartments() (neuronunit.cellmodelp.CellModel method)
get_obs() (in module neuronunit.optimization.get_neab)
get_observation() (in module neuronunit.aibs)
(neuronunit.neuroelectro.NeuroElectroPooledSummary method)
(neuronunit.neuroelectro.NeuroElectroSummary method)
get_parsed_trees() (neuronunit.models.lems.LEMSModel method)
get_peak() (neuronunit.tests.druckmann2013.Druckmann2013AP method)
get_pooled_stats() (neuronunit.neuroelectro.NeuroElectroPooledSummary method)
get_ramp_response() (neuronunit.cellmodelp.CellModel method)
get_result() (neuronunit.tests.passive.TestPulseTest method)
get_rh() (in module neuronunit.optimization.optimization_management)
get_rheobase_vm (neuronunit.tests.fi.RheobaseTestP attribute)
get_rin() (neuronunit.tests.passive.TestPulseTest class method)
get_segment() (neuronunit.tests.passive.TestPulseTest class method)
get_sp() (in module neuronunit.aibs)
get_spike_count() (neuronunit.capabilities.ProducesSpikes method)
get_spike_train() (in module neuronunit.capabilities.spike_functions)
(neuronunit.capabilities.ProducesSpikes method)
(neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.reduced.ReducedModel method)
(neuronunit.models.reduced.VeryReducedModel method)
(neuronunit.models.very_reduced.VeryReducedModel method)
get_spike_waveforms() (in module neuronunit.capabilities.spike_functions)
get_square_response() (neuronunit.cellmodelp.CellModel method)
get_ss (neuronunit.optimization.data_transport_container.DataTC attribute)
get_stability_range() (neuronunit.cellmodelp.CellModel method)
get_std_vm() (neuronunit.capabilities.ProducesMembranePotential method)
get_steady_state_waveform() (neuronunit.neuromldb.NeuroMLDBModel method)
get_stimulus() (neuronunit.models.backends.glif.GLIFBackend method)
get_structural_metrics() (neuronunit.cellmodelp.CellModel method)
get_sub_supra() (in module neuronunit.tests.fi)
get_sweep() (neuronunit.models.backends.glif.GLIFBackend method)
get_sweep_params() (in module neuronunit.aibs)
get_sweeps() (in module neuronunit.bbp)
(neuronunit.models.backends.glif.GLIFBackend method)
get_tau() (neuronunit.tests.passive.TestPulseTest class method)
get_tests() (in module neuronunit.optimization.get_neab)
get_trans_list() (in module neuronunit.optimization.optimization_management)
get_trough() (neuronunit.tests.druckmann2013.Druckmann2013AP method)
get_tv() (neuronunit.cellmodelp.CellModel method)
get_uncurated_data() (in module neuronunit.bbp)
get_value_dict() (in module neuronunit.aibs)
get_values() (neuronunit.neuroelectro.NeuroElectroData method)
(neuronunit.neuroelectro.NeuroElectroDataMap method)
(neuronunit.neuroelectro.NeuroElectroPooledSummary method)
(neuronunit.neuroelectro.NeuroElectroSummary method)
get_variable_step_analog_signal() (neuronunit.models.backends.neuron.NEURONBackend method)
get_vm (in module neuronunit.models.backends.rawpy)
get_vm() (in module neuronunit.models.backends.hhrawf)
get_waveform_by_current() (neuronunit.neuromldb.NeuroMLDBModel method)
get_waveform_current_amplitude() (neuronunit.neuromldb.NeuroMLDBModel method)
getBiasCurrent() (neuronunit.cellmodelp.CellModel method)
getRestingV() (neuronunit.cellmodelp.CellModel method)
getRheobase() (neuronunit.cellmodelp.CellModel method)
getSegment() (neuronunit.models.section_extension.HasSegment method)
getThreshold() (neuronunit.cellmodelp.CellModel method)
GLIFBackend (class in neuronunit.models.backends.glif)
grid_sample_init() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
H
has_pulse_generator() (neuronunit.models.lems.LEMSModel method)
HasSegment (class in neuronunit.models.section_extension)
HHBackend (class in neuronunit.models.backends.hhrawf)
I
id (neuronunit.neuroelectro.Article attribute)
(neuronunit.neuroelectro.EphysProp attribute)
(neuronunit.neuroelectro.Neuron attribute)
Id() (in module neuronunit.models.backends.hhrawf)
init_backend() (neuronunit.models.backends.geppetto.GeppettoBackend method)
(neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.backends.hhrawf.HHBackend method)
(neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.backends.rawpy.RAWBackend method)
init_cell_record() (neuronunit.cellmodelp.CellModel method)
init_dtc() (in module neuronunit.tests.fi)
init_pop() (in module neuronunit.optimization.optimization_management)
InitialAccommodationMeanTest (class in neuronunit.tests.druckmann2013)
inject_current() (neuronunit.capabilities.ReceivesCurrent method)
inject_square_current() (neuronunit.capabilities.ReceivesSquareCurrent method)
(neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.backends.hhrawf.HHBackend method)
(neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.backends.rawpy.RAWBackend method)
(neuronunit.models.reduced.ReducedModel method)
(neuronunit.models.reduced.VeryReducedModel method)
(neuronunit.models.static.StaticModel method)
(neuronunit.models.very_reduced.VeryReducedModel method)
(neuronunit.neuromldb.NeuroMLDBStaticModel method)
InjectedCurrent (class in neuronunit.tests.waveform)
InjectedCurrentAPAmplitudeTest (class in neuronunit.tests.waveform)
InjectedCurrentAPThresholdTest (class in neuronunit.tests.waveform)
InjectedCurrentAPWidthTest (class in neuronunit.tests.waveform)
InputResistanceTest (class in neuronunit.tests.druckmann2013)
(class in neuronunit.tests.passive)
interpolate_time_signal() (neuronunit.cellmodelp.CellModel method)
is_abstract_cell() (neuronunit.cellmodelp.CellModel method)
is_aibs_up() (in module neuronunit.aibs)
is_bbp_up() (in module neuronunit.bbp)
is_neuroelectro_up() (in module neuronunit.neuroelectro)
ISIBurstMeanChangeTest (class in neuronunit.tests.druckmann2013)
ISICVTest (class in neuronunit.tests.druckmann2013)
(class in neuronunit.tests.dynamics)
ISIMedianTest (class in neuronunit.tests.druckmann2013)
ISITest (class in neuronunit.tests.dynamics)
isolate_code_block() (in module neuronunit.tests.druckmann2013)
IVCurvePeakTest (class in neuronunit.tests.channel)
IVCurveSSTest (class in neuronunit.tests.channel)
J
jNeuroMLBackend (class in neuronunit.models.backends.jNeuroML)
L
LEMSModel (class in neuronunit.models.lems)
light_palette() (in module neuronunit.plottools)
LinearIFNeuron (class in neuronunit.models.backends.fhn)
linearInterpolate() (neuronunit.models.backends.neuron.NEURONBackend method)
list_curated_data() (in module neuronunit.bbp)
list_process() (neuronunit.cellmodelp.CellModel method)
list_sweeps() (in module neuronunit.bbp)
load() (neuronunit.models.backends.neuron.NEURONBackend method)
load_data() (in module neuronunit.plottools)
load_mechanisms() (neuronunit.models.backends.neuron.NEURONBackend method)
load_model() (neuronunit.cellmodelp.CellModel method)
(neuronunit.models.backends.neuron.NEURONBackend method)
local_variation (neuronunit.tests.dynamics.LocalVariationTest attribute)
LocalVariationTest (class in neuronunit.tests.dynamics)
M
make_report() (in module neuronunit.optimization.results_analysis)
make_up_lost() (in module neuronunit.optimization.optimization_management)
make_url() (neuronunit.neuroelectro.NeuroElectroData method)
(neuronunit.neuroelectro.NeuroElectroDataMap method)
MaxBranchOrderTest (class in neuronunit.tests.morphology)
MaxEuclideanDistanceTest (class in neuronunit.tests.morphology)
MaxPathDistanceTest (class in neuronunit.tests.morphology)
min_max() (in module neuronunit.optimization.results_analysis)
mint_generic_model() (in module neuronunit.optimization.optimization_management)
MorphologyTest (class in neuronunit.tests.morphology)
N
name (neuronunit.neuroelectro.EphysProp attribute)
(neuronunit.neuroelectro.Neuron attribute)
(neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.druckmann2013.AP12AHPDepthPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeDropTest attribute)
(neuronunit.tests.druckmann2013.AP12HalfWidthChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12RateOfChangePeakToTroughPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1AHPDepthTest attribute)
(neuronunit.tests.druckmann2013.AP1AmplitudeTest attribute)
(neuronunit.tests.druckmann2013.AP1DelayMeanTest attribute)
(neuronunit.tests.druckmann2013.AP1DelaySDTest attribute)
(neuronunit.tests.druckmann2013.AP1RateOfChangePeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP1SSAmplitudeChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthHalfHeightTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthPeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP2AHPDepthTest attribute)
(neuronunit.tests.druckmann2013.AP2AmplitudeTest attribute)
(neuronunit.tests.druckmann2013.AP2DelayMeanTest attribute)
(neuronunit.tests.druckmann2013.AP2DelaySDTest attribute)
(neuronunit.tests.druckmann2013.AP2RateOfChangePeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP2WidthHalfHeightTest attribute)
(neuronunit.tests.druckmann2013.AP2WidthPeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AccommodationAtSSMeanTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateMeanAtSSTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateToSSTest attribute)
(neuronunit.tests.druckmann2013.Burst1ISIMeanTest attribute)
(neuronunit.tests.druckmann2013.Burst1ISISDTest attribute)
(neuronunit.tests.druckmann2013.ISIBurstMeanChangeTest attribute)
(neuronunit.tests.druckmann2013.ISICVTest attribute)
(neuronunit.tests.druckmann2013.ISIMedianTest attribute)
(neuronunit.tests.druckmann2013.InitialAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.InputResistanceTest attribute)
(neuronunit.tests.druckmann2013.SSAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.SpikeRateStrongStimTest attribute)
(neuronunit.tests.dynamics.BurstinessTest attribute)
(neuronunit.tests.dynamics.FiringRateTest attribute)
(neuronunit.tests.dynamics.ISICVTest attribute)
(neuronunit.tests.dynamics.ISITest attribute)
(neuronunit.tests.dynamics.LocalVariationTest attribute)
(neuronunit.tests.dynamics.TFRTypeTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.fi.RheobaseTestP attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageContractionTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageDiameterTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageRallsRatioTest attribute)
(neuronunit.tests.morphology.ApicalDendriteFractalDimensionTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxBranchOrderTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxPathDistanceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteNumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.ApicalDendriteNumberofBranchesTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallDepthTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallHeightTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallWidthTest attribute)
(neuronunit.tests.morphology.ApicalDendritePartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalLengthTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalSurfaceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalVolumeTest attribute)
(neuronunit.tests.morphology.AverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.AverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.AverageContractionTest attribute)
(neuronunit.tests.morphology.AverageDiameterTest attribute)
(neuronunit.tests.morphology.AverageRallsRatioTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageContractionTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageDiameterTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageRallsRatioTest attribute)
(neuronunit.tests.morphology.BasalDendriteFractalDimensionTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxBranchOrderTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxPathDistanceTest attribute)
(neuronunit.tests.morphology.BasalDendriteNumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.BasalDendriteNumberofBranchesTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallDepthTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallHeightTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallWidthTest attribute)
(neuronunit.tests.morphology.BasalDendritePartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalLengthTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalSurfaceTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalVolumeTest attribute)
(neuronunit.tests.morphology.FractalDimensionTest attribute)
(neuronunit.tests.morphology.MaxBranchOrderTest attribute)
(neuronunit.tests.morphology.MaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.MaxPathDistanceTest attribute)
(neuronunit.tests.morphology.NumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.NumberofBranchesTest attribute)
(neuronunit.tests.morphology.NumberofStemsTest attribute)
(neuronunit.tests.morphology.OverallDepthTest attribute)
(neuronunit.tests.morphology.OverallHeightTest attribute)
(neuronunit.tests.morphology.OverallWidthTest attribute)
(neuronunit.tests.morphology.PartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.SomaSurfaceAreaTest attribute)
(neuronunit.tests.morphology.TotalLengthTest attribute)
(neuronunit.tests.morphology.TotalSurfaceTest attribute)
(neuronunit.tests.morphology.TotalVolumeTest attribute)
(neuronunit.tests.passive.CapacitanceTest attribute)
(neuronunit.tests.passive.InputResistanceTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TestPulseTest attribute)
(neuronunit.tests.passive.TimeConstantTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPAmplitudeTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPThresholdTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPWidthTest attribute)
neuroelectro_pooled_observation() (neuronunit.tests.base.VmTest class method)
neuroelectro_summary_observation() (in module neuronunit.optimization.get_neab)
(neuronunit.tests.base.VmTest class method)
NeuroElectroData (class in neuronunit.neuroelectro)
NeuroElectroDataMap (class in neuronunit.neuroelectro)
NeuroElectroError
NeuroElectroPooledSummary (class in neuronunit.neuroelectro)
NeuroElectroSummary (class in neuronunit.neuroelectro)
NeuroMLDBModel (class in neuronunit.neuromldb)
NeuroMLDBStaticModel (class in neuronunit.neuromldb)
Neuron (class in neuronunit.models.backends.fhn)
(class in neuronunit.neuroelectro)
NEURONBackend (class in neuronunit.models.backends.neuron)
neuronunit (module)
neuronunit.aibs (module)
neuronunit.bbp (module)
neuronunit.capabilities (module)
neuronunit.capabilities.channel (module)
neuronunit.capabilities.morphology (module)
neuronunit.capabilities.spike_functions (module)
neuronunit.cellmodelp (module)
neuronunit.models (module)
neuronunit.models.backends (module)
neuronunit.models.backends.base (module)
neuronunit.models.backends.fhn (module)
neuronunit.models.backends.geppetto (module)
neuronunit.models.backends.glif (module)
neuronunit.models.backends.hhrawf (module)
neuronunit.models.backends.jNeuroML (module)
neuronunit.models.backends.neuron (module)
neuronunit.models.backends.parse_glif (module)
neuronunit.models.backends.rawpy (module)
neuronunit.models.bindings (module)
neuronunit.models.channel (module)
neuronunit.models.lems (module)
neuronunit.models.morphology (module)
neuronunit.models.reduced (module)
neuronunit.models.section_extension (module)
neuronunit.models.static (module)
neuronunit.models.very_reduced (module)
neuronunit.neuroconstruct (module)
neuronunit.neuroconstruct.capabilities (module)
neuronunit.neuroelectro (module)
neuronunit.neuromldb (module)
neuronunit.optimization (module)
neuronunit.optimization.algorithms (module)
neuronunit.optimization.bp_opt (module)
neuronunit.optimization.data_transport_container (module)
neuronunit.optimization.exhaustive_search (module)
neuronunit.optimization.get_neab (module)
neuronunit.optimization.model_parameters (module)
neuronunit.optimization.optimization_management (module)
neuronunit.optimization.results_analysis (module)
neuronunit.plottools (module)
neuronunit.tests (module)
neuronunit.tests.base (module)
neuronunit.tests.channel (module)
neuronunit.tests.druckmann2013 (module)
neuronunit.tests.dynamics (module)
neuronunit.tests.fi (module)
neuronunit.tests.morphology (module)
neuronunit.tests.passive (module)
neuronunit.tests.waveform (module)
new_genes() (in module neuronunit.optimization.optimization_management)
nlex_id (neuronunit.neuroelectro.EphysProp attribute)
(neuronunit.neuroelectro.Neuron attribute)
NML2ChannelAnalysis (class in neuronunit.capabilities.channel)
nonunited_observation_keys (neuronunit.tests.dynamics.BurstinessTest attribute)
(neuronunit.tests.dynamics.ISICVTest attribute)
norm (neuronunit.optimization.bp_opt.WeightedSumFitness attribute)
not_just_mean() (in module neuronunit.plottools)
NumberofBifurcationsTest (class in neuronunit.tests.morphology)
NumberofBranchesTest (class in neuronunit.tests.morphology)
NumberofStemsTest (class in neuronunit.tests.morphology)
nunit_evaluation() (in module neuronunit.optimization.optimization_management)
nunit_evaluation_df() (in module neuronunit.optimization.optimization_management)
O
observation_schema (neuronunit.tests.base.VmTest attribute)
obtain_rheobase() (in module neuronunit.optimization.optimization_management)
open_data() (in module neuronunit.bbp)
OverallDepthTest (class in neuronunit.tests.morphology)
OverallHeightTest (class in neuronunit.tests.morphology)
OverallWidthTest (class in neuronunit.tests.morphology)
P
pandas_rh_search() (in module neuronunit.plottools)
parallel_route() (in module neuronunit.optimization.optimization_management)
param_distance() (in module neuronunit.optimization.results_analysis)
params_schema (neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
PartitionAsymmetryTest (class in neuronunit.tests.morphology)
passive_values() (in module neuronunit.optimization.optimization_management)
pca (neuronunit.tests.morphology.AverageDiameterTest attribute)
(neuronunit.tests.morphology.MorphologyTest attribute)
(neuronunit.tests.morphology.OverallDepthTest attribute)
(neuronunit.tests.morphology.OverallHeightTest attribute)
(neuronunit.tests.morphology.OverallWidthTest attribute)
pca() (in module neuronunit.plottools)
plot_data() (in module neuronunit.bbp)
plot_evaluate() (in module neuronunit.plottools)
plot_iv_curve() (neuronunit.capabilities.channel.NML2ChannelAnalysis method)
(neuronunit.models.channel.ChannelModel method)
plot_log() (in module neuronunit.plottools)
plot_membrane_potential() (neuronunit.capabilities.ProducesMembranePotential method)
plot_objectives_history() (in module neuronunit.plottools)
plot_surface() (in module neuronunit.plottools)
plot_vm() (in module neuronunit.plottools)
plotss() (in module neuronunit.plottools)
pmid (neuronunit.neuroelectro.Article attribute)
produce_swc() (neuronunit.capabilities.morphology.ProducesSWC method)
(neuronunit.models.morphology.SwcCellModel method)
ProducesActionPotentials (class in neuronunit.capabilities)
ProducesMembranePotential (class in neuronunit.capabilities)
ProducesSpikes (class in neuronunit.capabilities)
ProducesSWC (class in neuronunit.capabilities.morphology)
R
RAWBackend (class in neuronunit.models.backends.rawpy)
read_api_url() (neuronunit.neuromldb.NeuroMLDBModel method)
ReceivesCurrent (class in neuronunit.capabilities)
ReceivesSquareCurrent (class in neuronunit.capabilities)
recompute_range() (neuronunit.cellmodelp.CellModel method)
reduce_params (in module neuronunit.optimization.exhaustive_search)
ReducedModel (class in neuronunit.models.reduced)
replace_zero_std() (in module neuronunit.optimization.get_neab)
require_attrs (neuronunit.neuroelectro.NeuroElectroDataMap attribute)
(neuronunit.neuroelectro.NeuroElectroSummary attribute)
required_capabilities (neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.druckmann2013.Druckmann2013Test attribute)
(neuronunit.tests.dynamics.LocalVariationTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.morphology.MorphologyTest attribute)
(neuronunit.tests.passive.TestPulseTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
(neuronunit.tests.waveform.InjectedCurrent attribute)
reset_neuron() (neuronunit.models.backends.neuron.NEURONBackend method)
reset_vm() (neuronunit.models.backends.neuron.NEURONBackend method)
RestingPotentialTest (class in neuronunit.tests.passive)
RheobaseTest (class in neuronunit.tests.fi)
RheobaseTestP (class in neuronunit.tests.fi)
rotate_cell_along_PCA_axes() (neuronunit.cellmodelp.CellModel method)
run() (neuronunit.models.reduced.VeryReducedModel method)
(neuronunit.optimization.bp_opt.SciUnitOptimization method)
run_ga() (in module neuronunit.optimization.optimization_management)
run_grid() (in module neuronunit.optimization.exhaustive_search)
run_rick_grid() (in module neuronunit.optimization.exhaustive_search)
run_simple_grid() (in module neuronunit.optimization.exhaustive_search)
S
sample_points() (in module neuronunit.optimization.exhaustive_search)
sanity_check() (neuronunit.tests.base.VmTest method)
save_arb_current() (neuronunit.cellmodelp.CellModel method)
save_bias_current() (neuronunit.cellmodelp.CellModel method)
save_CVODE_STEP_FREQUENCIES() (neuronunit.cellmodelp.CellModel method)
save_cvode_step_frequencies() (neuronunit.cellmodelp.CellModel method)
save_DRUCKMANN_PROPERTIES() (neuronunit.cellmodelp.CellModel method)
save_DT_SENSITIVITY() (neuronunit.cellmodelp.CellModel method)
save_dt_sensitivity_set() (neuronunit.cellmodelp.CellModel method)
save_LMeasure_metrics() (neuronunit.cellmodelp.CellModel method)
save_LONG_SQUARE() (neuronunit.cellmodelp.CellModel method)
save_morphology_data() (neuronunit.cellmodelp.CellModel method)
save_morphometrics() (neuronunit.cellmodelp.CellModel method)
save_NOISE() (neuronunit.cellmodelp.CellModel method)
save_NOISE_RAMP() (neuronunit.cellmodelp.CellModel method)
save_noise_response_set() (neuronunit.cellmodelp.CellModel method)
save_RAMP() (neuronunit.cellmodelp.CellModel method)
save_resting_voltage() (neuronunit.cellmodelp.CellModel method)
save_rheobase() (neuronunit.cellmodelp.CellModel method)
save_rotating_gif() (neuronunit.cellmodelp.CellModel method)
save_SHORT_SQUARE() (neuronunit.cellmodelp.CellModel method)
save_SHORT_SQUARE_HOLD() (neuronunit.cellmodelp.CellModel method)
save_SHORT_SQUARE_TRIPPLE() (neuronunit.cellmodelp.CellModel method)
save_SQUARE() (neuronunit.cellmodelp.CellModel method)
save_square_current_set() (neuronunit.cellmodelp.CellModel method)
save_SQUARE_SUBTHRESHOLD() (neuronunit.cellmodelp.CellModel method)
save_square_tuple_set() (neuronunit.cellmodelp.CellModel method)
save_stability_range() (neuronunit.cellmodelp.CellModel method)
save_STEADY_STATE() (neuronunit.cellmodelp.CellModel method)
save_structural_metrics() (neuronunit.cellmodelp.CellModel method)
save_threshold() (neuronunit.cellmodelp.CellModel method)
save_to_SWC() (neuronunit.cellmodelp.CellModel method)
save_tolerances_with_stim() (neuronunit.cellmodelp.CellModel method)
scatter_surface() (in module neuronunit.plottools)
SciUnitOptimization (class in neuronunit.optimization.bp_opt)
score_proc() (in module neuronunit.optimization.optimization_management)
score_type (neuronunit.tests.druckmann2013.Druckmann2013Test attribute)
(neuronunit.tests.FakeTest attribute)
(neuronunit.tests.dynamics.BurstinessTest attribute)
(neuronunit.tests.dynamics.FiringRateTest attribute)
(neuronunit.tests.dynamics.ISICVTest attribute)
(neuronunit.tests.dynamics.ISITest attribute)
(neuronunit.tests.dynamics.LocalVariationTest attribute)
(neuronunit.tests.dynamics.TFRTypeTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.fi.RheobaseTestP attribute)
(neuronunit.tests.morphology.MorphologyTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TestPulseTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPWidthTest attribute)
serial_route() (in module neuronunit.optimization.optimization_management)
set_article() (neuronunit.neuroelectro.NeuroElectroDataMap method)
set_attrs() (neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.backends.hhrawf.HHBackend method)
(neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.backends.rawpy.RAWBackend method)
(neuronunit.models.reduced.VeryReducedModel method)
set_backend() (neuronunit.models.reduced.VeryReducedModel method)
set_ephysprop() (neuronunit.neuroelectro.NeuroElectroData method)
set_evaluate() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
set_fitness() (neuronunit.optimization.bp_opt.WSFloatIndividual method)
(neuronunit.optimization.bp_opt.WSListIndividual method)
set_integration_method() (neuronunit.models.backends.neuron.NEURONBackend method)
set_lems_attrs() (neuronunit.models.lems.LEMSModel method)
set_lems_run_params() (neuronunit.models.lems.LEMSModel method)
set_membrane_potential() (neuronunit.models.static.ExternalModel method)
set_model_attrs() (neuronunit.models.static.ExternalModel method)
set_names() (neuronunit.neuroelectro.NeuroElectroData method)
set_neuron() (neuronunit.neuroelectro.NeuroElectroData method)
set_pop() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
set_run_params() (neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.reduced.VeryReducedModel method)
set_stop_time() (neuronunit.models.backends.glif.GLIFBackend method)
(neuronunit.models.backends.hhrawf.HHBackend method)
(neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
(neuronunit.models.backends.rawpy.RAWBackend method)
set_time_step() (neuronunit.models.backends.jNeuroML.jNeuroMLBackend method)
(neuronunit.models.backends.neuron.NEURONBackend method)
set_tolerance() (neuronunit.models.backends.neuron.NEURONBackend method)
setCurrent() (neuronunit.cellmodelp.CellModel method)
setnparams() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
setSegment() (neuronunit.models.section_extension.HasSegment method)
setup_deap() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
setup_protocol() (neuronunit.tests.passive.TestPulseTest method)
shadow() (in module neuronunit.plottools)
sim_init() (neuronunit.cellmodelp.CellModel method)
simulate_iteration() (neuronunit.cellmodelp.CellModel method)
SingleCellModel (class in neuronunit.models.section_extension)
snake_to_camel() (in module neuronunit.models.channel)
solve() (neuronunit.models.backends.fhn.FNNeuron method)
(neuronunit.models.backends.fhn.LinearIFNeuron method)
SomaSurfaceAreaTest (class in neuronunit.tests.morphology)
sp_spike_width() (in module neuronunit.plottools)
specificity (neuronunit.tests.morphology.ApicalDendriteAverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageContractionTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageDiameterTest attribute)
(neuronunit.tests.morphology.ApicalDendriteAverageRallsRatioTest attribute)
(neuronunit.tests.morphology.ApicalDendriteFractalDimensionTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxBranchOrderTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteMaxPathDistanceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteNumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.ApicalDendriteNumberofBranchesTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallDepthTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallHeightTest attribute)
(neuronunit.tests.morphology.ApicalDendriteOverallWidthTest attribute)
(neuronunit.tests.morphology.ApicalDendritePartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalLengthTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalSurfaceTest attribute)
(neuronunit.tests.morphology.ApicalDendriteTotalVolumeTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageContractionTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageDiameterTest attribute)
(neuronunit.tests.morphology.BasalDendriteAverageRallsRatioTest attribute)
(neuronunit.tests.morphology.BasalDendriteFractalDimensionTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxBranchOrderTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.BasalDendriteMaxPathDistanceTest attribute)
(neuronunit.tests.morphology.BasalDendriteNumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.BasalDendriteNumberofBranchesTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallDepthTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallHeightTest attribute)
(neuronunit.tests.morphology.BasalDendriteOverallWidthTest attribute)
(neuronunit.tests.morphology.BasalDendritePartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalLengthTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalSurfaceTest attribute)
(neuronunit.tests.morphology.BasalDendriteTotalVolumeTest attribute)
(neuronunit.tests.morphology.MorphologyTest attribute)
SpikeRateStrongStimTest (class in neuronunit.tests.druckmann2013)
spikes2amplitudes() (in module neuronunit.capabilities.spike_functions)
spikes2thresholds() (in module neuronunit.capabilities.spike_functions)
spikes2widths() (in module neuronunit.capabilities.spike_functions)
SSAccommodationMeanTest (class in neuronunit.tests.druckmann2013)
state (neuronunit.tests.base.VmTest attribute)
StaticModel (class in neuronunit.models.static)
substitute_criteria() (in module neuronunit.optimization.get_neab)
substitute_parallel_for_serial() (in module neuronunit.optimization.get_neab)
sum (neuronunit.optimization.bp_opt.WeightedSumFitness attribute)
surfaces() (in module neuronunit.plottools)
SwcCellModel (class in neuronunit.models.morphology)
switch_logic() (in module neuronunit.optimization.optimization_management)
T
temp_dir (neuronunit.models.lems.LEMSModel attribute)
test_runner() (in module neuronunit.optimization.optimization_management)
TestPulseTest (class in neuronunit.tests.passive)
tfc2i() (in module neuronunit.optimization.exhaustive_search)
tfg2i (in module neuronunit.optimization.exhaustive_search)
TFRTypeTest (class in neuronunit.tests.dynamics)
threshold_FI() (neuronunit.tests.fi.RheobaseTest method)
tiled_figure() (in module neuronunit.plottools)
TimeConstantTest (class in neuronunit.tests.passive)
TotalLengthTest (class in neuronunit.tests.morphology)
TotalSurfaceTest (class in neuronunit.tests.morphology)
TotalVolumeTest (class in neuronunit.tests.morphology)
transcribe_units() (in module neuronunit.optimization.model_parameters)
transdict (in module neuronunit.optimization.exhaustive_search)
transdict() (neuronunit.optimization.bp_opt.SciUnitOptimization method)
transform() (in module neuronunit.optimization.optimization_management)
type2007 (in module neuronunit.optimization.model_parameters)
U
united_observation_keys (neuronunit.tests.dynamics.ISICVTest attribute)
units (neuronunit.tests.base.VmTest attribute)
(neuronunit.tests.druckmann2013.AP12AHPDepthPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12AmplitudeDropTest attribute)
(neuronunit.tests.druckmann2013.AP12HalfWidthChangePercentTest attribute)
(neuronunit.tests.druckmann2013.AP12RateOfChangePeakToTroughPercentChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1AHPDepthTest attribute)
(neuronunit.tests.druckmann2013.AP1AmplitudeTest attribute)
(neuronunit.tests.druckmann2013.AP1DelayMeanTest attribute)
(neuronunit.tests.druckmann2013.AP1DelaySDTest attribute)
(neuronunit.tests.druckmann2013.AP1RateOfChangePeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AP1SSAmplitudeChangeTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthHalfHeightTest attribute)
(neuronunit.tests.druckmann2013.AP1WidthPeakToTroughTest attribute)
(neuronunit.tests.druckmann2013.AccommodationAtSSMeanTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateMeanAtSSTest attribute)
(neuronunit.tests.druckmann2013.AccommodationRateToSSTest attribute)
(neuronunit.tests.druckmann2013.Burst1ISIMeanTest attribute)
(neuronunit.tests.druckmann2013.ISIBurstMeanChangeTest attribute)
(neuronunit.tests.druckmann2013.ISICVTest attribute)
(neuronunit.tests.druckmann2013.ISIMedianTest attribute)
(neuronunit.tests.druckmann2013.InitialAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.InputResistanceTest attribute)
(neuronunit.tests.druckmann2013.SSAccommodationMeanTest attribute)
(neuronunit.tests.druckmann2013.SpikeRateStrongStimTest attribute)
(neuronunit.tests.dynamics.BurstinessTest attribute)
(neuronunit.tests.dynamics.FiringRateTest attribute)
(neuronunit.tests.dynamics.ISICVTest attribute)
(neuronunit.tests.dynamics.ISITest attribute)
(neuronunit.tests.dynamics.LocalVariationTest attribute)
(neuronunit.tests.fi.RheobaseTest attribute)
(neuronunit.tests.fi.RheobaseTestP attribute)
(neuronunit.tests.morphology.AverageBifurcationAngleLocalTest attribute)
(neuronunit.tests.morphology.AverageBifurcationAngleRemoteTest attribute)
(neuronunit.tests.morphology.AverageContractionTest attribute)
(neuronunit.tests.morphology.AverageDiameterTest attribute)
(neuronunit.tests.morphology.AverageRallsRatioTest attribute)
(neuronunit.tests.morphology.FractalDimensionTest attribute)
(neuronunit.tests.morphology.MaxBranchOrderTest attribute)
(neuronunit.tests.morphology.MaxEuclideanDistanceTest attribute)
(neuronunit.tests.morphology.MaxPathDistanceTest attribute)
(neuronunit.tests.morphology.NumberofBifurcationsTest attribute)
(neuronunit.tests.morphology.NumberofBranchesTest attribute)
(neuronunit.tests.morphology.NumberofStemsTest attribute)
(neuronunit.tests.morphology.OverallDepthTest attribute)
(neuronunit.tests.morphology.OverallHeightTest attribute)
(neuronunit.tests.morphology.OverallWidthTest attribute)
(neuronunit.tests.morphology.PartitionAsymmetryTest attribute)
(neuronunit.tests.morphology.SomaSurfaceAreaTest attribute)
(neuronunit.tests.morphology.TotalLengthTest attribute)
(neuronunit.tests.morphology.TotalSurfaceTest attribute)
(neuronunit.tests.morphology.TotalVolumeTest attribute)
(neuronunit.tests.passive.CapacitanceTest attribute)
(neuronunit.tests.passive.InputResistanceTest attribute)
(neuronunit.tests.passive.RestingPotentialTest attribute)
(neuronunit.tests.passive.TimeConstantTest attribute)
(neuronunit.tests.waveform.APAmplitudeTest attribute)
(neuronunit.tests.waveform.APThresholdTest attribute)
(neuronunit.tests.waveform.APWidthTest attribute)
(neuronunit.tests.waveform.InjectedCurrentAPWidthTest attribute)
update_amplitude() (in module neuronunit.optimization.get_neab)
update_deap_pop() (in module neuronunit.optimization.optimization_management)
update_dtc_grid (in module neuronunit.optimization.exhaustive_search)
update_dtc_pop() (in module neuronunit.optimization.optimization_management)
url (neuronunit.neuroelectro.NeuroElectroData attribute)
(neuronunit.neuroelectro.NeuroElectroDataMap attribute)
(neuronunit.neuroelectro.NeuroElectroSummary attribute)
url_to_path() (neuronunit.models.lems.LEMSModel method)
use_dtc_to_plotting() (in module neuronunit.plottools)
use_optimal_dt_if_available() (neuronunit.cellmodelp.CellModel method)
V
V_ddt() (neuronunit.models.backends.fhn.FNNeuron method)
(neuronunit.models.backends.fhn.LinearIFNeuron method)
validate_observation() (neuronunit.tests.base.VmTest method)
(neuronunit.tests.dynamics.TFRTypeTest method)
VeryReducedModel (class in neuronunit.models.reduced)
(class in neuronunit.models.very_reduced)
VmTest (class in neuronunit.tests.base)
W
W_ddt() (neuronunit.models.backends.fhn.FNNeuron method)
weighted_sum (neuronunit.optimization.bp_opt.WeightedSumFitness attribute)
WeightedSumFitness (class in neuronunit.optimization.bp_opt)
write_opt_to_nml (in module neuronunit.optimization.optimization_management)
WSFloatIndividual (class in neuronunit.optimization.bp_opt)
(class in neuronunit.optimization.optimization_management)
WSListIndividual (class in neuronunit.optimization.bp_opt)
(class in neuronunit.optimization.exhaustive_search)
(class in neuronunit.optimization.optimization_management)
NeuronUnit
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